JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC9_chr19_47251525_47276953	0/0	t0069	418	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0070	416	1	0	0	0	1	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0071	422	1	0	0	0	1	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0072	414	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0073	431	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0074	519	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0075	517	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0076	515	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0077	417	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0078	420	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0079	519	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0080	421	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0081	431	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0082	428	1	0	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0083	426	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0084	432	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0085	434	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0086	428	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0087	426	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0088	418	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0089	430	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0090	428	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0091	432	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0092	430	1	0	0	0	1	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0093	428	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0094	422	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0095	443	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0096	440	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0097	438	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0098	434	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0099	416	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0100	444	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0101	436	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0102	426	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0103	448	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0104	440	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0105	436	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0106	448	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0107	434	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0108	430	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0109	439	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0110	440	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0111	424	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0112	452	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0113	448	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0114	454	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0115	454	1	0	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0116	452	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0117	442	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0118	460	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953