JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC9_chr19_47251525_47276953	0/0	t0119	454	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0120	468	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0121	442	1	0	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0122	448	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0123	450	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0124	476	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0125	412	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0126	410	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0127	418	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0128	414	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0129	418	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0130	432	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0131	424	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0132	444	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0133	442	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0134	450	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0135	418	1	0	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0136	426	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0137	424	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0138	422	1	0	0	0	1	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0139	432	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0140	438	1	0	0	0	1	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	t0141	426	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCER1_chr12_90947215_90960176	0/0	t0001	1742	172	33	30	88	4	17	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	1/1	t0002	1742	121	45	17	43	0	14	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0003	1742	66	1	6	55	0	4	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0004	1743	20	4	9	1	2	4	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0005	1742	13	12	1	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0006	1743	4	0	2	0	1	1	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0007	1742	2	2	0	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0008	1742	1	0	0	1	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0009	1742	1	0	0	0	1	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0010	1742	1	0	0	0	1	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0011	1731	1	0	1	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0012	1743	1	0	1	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0013	1742	1	0	0	0	1	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0014	1742	1	1	0	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	t0015	1742	1	0	1	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER2_chr19_38903980_38917186	1/1	t0001	285	436	88	80	202	18	46	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	t0002	285	10	10	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	t0003	285	2	0	0	2	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	t0004	285	1	0	0	1	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	t0005	285	1	0	0	1	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCHCR1_chr6_31137439_31162802	0/1	t0001	356	232	52	38	104	11	26	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	t0002	356	177	32	28	95	5	17	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	t0003	356	22	6	8	7	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	t0004	356	18	0	8	4	2	4	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	t0005	356	4	2	0	2	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	t0006	356	1	1	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	t0007	356	1	1	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802