JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCIN_chr9_36164388_36176334	1/1	t0001	181	273	57	52	125	13	24	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	t0002	181	145	30	19	71	3	22	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	t0003	181	5	4	1	0	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	t0004	181	2	2	0	0	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	t0005	181	1	1	0	0	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCKAR_chr4_26476396_26495484	1/1	t0001	460	238	53	45	112	10	16	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0002	460	118	15	19	65	3	16	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0003	460	82	21	8	40	3	10	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0004	460	6	2	1	1	0	2	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0005	460	2	2	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0006	460	2	2	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0007	460	2	0	0	2	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0008	460	1	1	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0009	460	1	1	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0010	460	1	0	1	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	t0011	460	1	1	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKBR_chr11_6254838_6277127	0/1	t0001	676	161	13	25	98	6	18	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0002	676	108	8	11	77	5	7	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0003	676	20	5	9	2	1	3	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0004	676	16	1	9	2	0	4	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0005	676	15	2	5	7	0	1	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0006	676	12	2	2	4	0	4	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0007	676	9	8	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0008	676	9	2	2	0	3	2	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0009	676	9	8	0	0	1	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0010	676	8	2	4	0	0	2	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0011	676	8	7	0	0	0	1	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0012	676	6	5	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0013	676	6	3	3	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0014	676	5	5	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0015	676	5	5	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0016	676	3	3	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0017	676	2	1	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0018	676	2	0	2	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0019	676	2	1	0	0	0	1	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0020	676	2	2	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0021	676	2	1	0	1	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0022	676	2	1	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0023	676	1	0	0	0	1	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0024	676	1	0	0	0	1	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0025	676	1	0	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0026	676	1	0	0	1	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0027	676	1	1	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0028	676	1	0	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0029	676	1	1	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0030	676	1	1	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0031	676	1	1	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0032	676	1	1	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	1/0	t0033	676	1	0	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0034	676	1	0	0	0	0	1	copy fasta	CCKBR	chr11	6254838	6277127