JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCKBR_chr11_6254838_6277127	0/0	t0035	676	1	1	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	t0036	676	1	1	0	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCK_chr3_42252826_42271185	0/1	t0001	1157	271	41	61	122	14	32	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	1/0	t0002	1157	97	24	14	49	4	5	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0003	1157	16	0	3	12	0	1	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0004	1157	11	7	1	3	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0005	1157	9	9	0	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0006	1157	7	7	0	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0007	1157	6	5	1	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0008	1157	4	0	4	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0009	1157	2	0	2	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0010	1157	1	1	0	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0011	1157	1	0	0	1	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0012	1157	1	0	0	1	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0013	1157	1	1	0	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0014	1157	1	1	0	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0015	1157	1	1	0	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	t0016	1157	1	1	0	0	0	0	copy fasta	CCK	chr3	42252826	42271185
CCL11_chr17_34280742_34293334	0/0	t0001	712	141	12	31	81	5	12	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0002	711	84	6	11	53	3	11	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	1/0	t0003	712	38	3	8	16	2	8	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0004	713	26	1	14	8	2	1	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0005	712	24	2	1	21	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0006	711	19	17	2	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0007	711	17	12	2	1	0	2	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0008	711	16	12	2	0	0	2	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0009	711	15	3	2	5	1	4	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/1	t0010	713	9	1	1	6	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0011	712	9	1	0	8	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0012	712	7	2	0	4	0	1	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0013	711	4	4	0	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0014	711	4	3	1	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0015	711	3	3	0	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0016	713	2	0	0	2	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0017	712	2	0	0	0	2	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0018	714	2	2	0	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0019	712	2	0	1	0	0	1	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0020	711	2	0	2	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0021	711	2	0	1	0	1	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0022	713	2	0	0	2	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0023	712	2	1	1	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0024	712	2	0	0	2	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0025	711	1	0	0	1	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0026	713	1	0	0	1	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0027	714	1	0	0	1	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0028	713	1	0	0	0	0	1	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0029	711	1	0	0	0	0	1	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0030	713	1	0	0	1	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0031	711	1	1	0	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0032	711	1	1	0	0	0	0	copy fasta	CCL11	chr17	34280742	34293334