JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCL11_chr17_34280742_34293334	0/0	t0033	711	1	1	0	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0034	712	1	0	0	1	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0035	712	1	0	0	1	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0036	711	1	1	0	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0037	711	1	1	0	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	t0038	712	1	0	0	1	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL13_chr17_34351480_34363610	1/1	t0001	527	437	86	77	212	12	48	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	t0002	527	7	4	1	0	2	0	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	t0003	527	1	0	0	1	0	0	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	t0004	527	1	0	0	1	0	0	copy fasta	CCL13	chr17	34351480	34363610
CCL14_chr17_35978288_35991729	0/1	t0001	594	321	75	56	134	14	41	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0002	594	56	0	14	40	1	1	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0003	594	27	4	4	12	1	6	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0004	594	17	10	3	4	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0005	594	9	0	0	9	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0006	594	4	2	2	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0007	594	4	4	0	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0008	594	2	0	0	2	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0009	594	1	0	1	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0010	594	1	0	0	1	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0011	594	1	1	0	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0012	594	1	1	0	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	t0013	594	1	1	0	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL15_chr17_35992582_36006553	0/1	t0001	247	381	65	79	179	17	40	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	t0002	247	60	33	3	21	1	2	copy fasta	CCL15	chr17	35992582	36006553
CCL16_chr17_35971499_35986497	0/0	t0001	1145	195	56	14	103	1	21	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/1	t0002	1145	179	8	31	106	11	22	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0003	1128	44	15	19	8	0	2	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0004	1145	11	3	3	0	2	3	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0005	1145	5	5	0	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0006	1144	5	2	0	3	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0007	1146	4	2	2	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0008	1128	3	0	0	2	0	1	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0009	1144	3	0	1	0	2	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0010	1128	2	2	0	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0011	1145	2	2	0	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0012	1145	2	2	0	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0013	1145	1	0	0	0	0	1	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	t0014	1144	1	1	0	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL17_chr16_57399767_57421063	1/1	t0001	332	378	96	58	170	10	42	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	t0002	332	8	0	4	0	2	2	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	t0003	332	1	0	0	1	0	0	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	t0004	332	1	0	0	1	0	0	copy fasta	CCL17	chr16	57399767	57421063
CCL18_chr17_36059272_36077032	0/1	t0001	1063	340	95	64	133	11	36	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	t0002	1063	109	1	18	73	7	10	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	t0003	1063	3	1	0	2	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	t0004	1063	1	0	0	1	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	t0005	1063	1	0	0	1	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	t0006	1063	1	1	0	0	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL19_chr9_34684570_34696276	1/1	t0001	387	367	93	83	123	18	48	copy fasta	CCL19	chr9	34684570	34696276