JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCL19_chr9_34684570_34696276	0/0	t0002	387	26	0	3	23	0	0	copy fasta	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	t0003	387	3	3	0	0	0	0	copy fasta	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	t0004	387	1	1	0	0	0	0	copy fasta	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	t0005	387	1	0	0	1	0	0	copy fasta	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	t0006	387	1	1	0	0	0	0	copy fasta	CCL19	chr9	34684570	34696276
CCL19_chr9_34684570_34696276	0/0	t0007	387	1	0	0	1	0	0	copy fasta	CCL19	chr9	34684570	34696276
CCL1_chr17_34355328_34368233	1/1	t0001	304	401	74	81	190	14	40	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	t0002	304	11	8	1	0	0	2	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	t0003	304	2	0	2	0	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	t0004	304	1	1	0	0	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	t0005	304	1	1	0	0	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL20_chr2_227808842_227822556	1/1	t0001	544	434	93	79	197	16	47	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	t0002	544	4	0	0	4	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	t0003	544	4	4	0	0	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	t0004	544	3	0	3	0	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	t0005	544	1	0	0	1	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	t0006	544	1	0	0	0	0	1	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	t0007	544	1	1	0	0	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL21_chr9_34704005_34715136	1/1	t0001	460	384	78	69	183	16	36	copy fasta	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	t0002	460	40	3	15	8	2	12	copy fasta	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	t0003	460	6	6	0	0	0	0	copy fasta	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	t0004	460	3	3	0	0	0	0	copy fasta	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	t0005	460	1	1	0	0	0	0	copy fasta	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	t0006	460	1	1	0	0	0	0	copy fasta	CCL21	chr9	34704005	34715136
CCL21_chr9_34704005_34715136	0/0	t0007	460	1	0	0	1	0	0	copy fasta	CCL21	chr9	34704005	34715136
CCL22_chr16_57353783_57371189	0/0	t0001	2639	119	1	36	63	5	14	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0002	2638	54	0	4	49	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/1	t0003	2638	32	10	9	5	1	6	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0004	2638	32	31	1	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	1/0	t0005	2636	30	1	9	17	0	2	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0006	2638	30	14	8	3	2	3	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0007	2639	19	0	0	14	0	5	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0008	2636	14	13	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0009	2639	14	4	1	4	0	5	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0010	2636	10	10	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0011	2639	7	0	3	3	1	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0012	2639	6	0	0	5	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0013	2638	6	1	4	0	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0014	2640	6	1	0	3	0	2	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0015	2636	5	0	1	4	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0016	2637	4	0	0	4	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0017	2637	3	0	0	3	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0018	2638	2	0	0	1	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0019	2635	2	2	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0020	2637	2	2	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0021	2638	2	0	0	2	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0022	2639	2	0	0	0	2	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0023	2639	2	0	0	2	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0024	2639	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0025	2635	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189