JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCL22_chr16_57353783_57371189	0/0	t0026	2636	1	1	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0027	2636	1	1	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0028	2636	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0029	2638	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0030	2638	1	1	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0031	2637	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0032	2638	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0033	2638	1	0	0	0	1	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0034	2637	1	1	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0035	2636	1	1	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0036	2637	1	0	1	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0037	2637	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0038	2638	1	0	0	0	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0039	2638	1	0	0	0	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0040	2638	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0041	2638	1	0	0	0	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0042	2638	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0043	2639	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0044	2639	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0045	2638	1	1	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0046	2638	1	1	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0047	2638	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0048	2638	1	0	0	0	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0049	2639	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0050	2640	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0051	2639	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0052	2639	1	0	1	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0053	2639	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0054	2639	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0055	2639	1	0	0	0	0	1	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	t0056	2640	1	1	0	0	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL23_chr17_36008058_36022972	0/1	t0001	215	396	81	70	191	14	39	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	t0002	215	12	12	0	0	0	0	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	t0003	215	10	0	3	5	0	2	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	t0004	215	5	1	3	0	0	1	copy fasta	CCL23	chr17	36008058	36022972
CCL24_chr7_75805825_75818806	1/0	t0001	1063	64	31	13	5	3	11	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0002	1063	55	2	5	47	0	1	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/1	t0003	1063	55	5	14	30	1	4	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0004	1064	47	14	10	19	1	3	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0005	1063	25	8	11	0	1	5	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0006	1061	23	0	2	18	0	3	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0007	1064	20	0	0	20	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0008	1063	19	2	4	6	1	6	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0009	1063	14	0	1	13	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0010	1063	9	0	2	7	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0011	1061	6	0	0	6	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0012	1063	6	6	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0013	1063	5	4	1	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0014	1063	5	1	3	0	1	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0015	1063	4	3	0	0	1	0	copy fasta	CCL24	chr7	75805825	75818806