JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCL24_chr7_75805825_75818806	0/0	t0016	1064	4	0	1	3	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0017	1063	4	0	2	0	1	1	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0018	1063	4	3	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0019	1063	4	0	0	4	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0020	1061	3	0	1	0	1	1	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0021	1063	3	1	1	0	0	1	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0022	1063	2	0	0	2	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0023	1063	2	0	1	0	0	1	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0024	1064	2	2	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0025	1063	1	1	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0026	1063	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0027	1063	1	1	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0028	1063	1	0	0	0	0	1	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0029	1063	1	1	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0030	1063	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0031	1063	1	0	1	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0032	1061	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0033	1064	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0034	1062	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0035	1065	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0036	1063	1	0	1	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0037	1064	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0038	1063	1	1	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0039	1063	1	1	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0040	1064	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0041	1063	1	0	1	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0042	1064	1	0	1	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0043	1063	1	0	0	0	1	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0044	1064	1	0	0	1	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	t0045	1063	1	1	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL25_chr19_8047760_8067650	1/0	t0001	539	366	80	66	162	16	41	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/1	t0002	539	42	1	16	20	1	3	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	t0003	539	10	3	4	0	1	2	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	t0004	539	3	0	0	0	0	3	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	t0005	539	2	2	0	0	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	t0006	539	1	0	0	1	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	t0007	539	1	1	0	0	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	t0008	539	1	1	0	0	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	t0009	539	1	0	0	1	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	t0010	539	1	0	0	0	0	1	copy fasta	CCL25	chr19	8047760	8067650
CCL26_chr7_75764538_75777211	1/1	t0001	191	298	55	46	151	11	33	copy fasta	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	t0002	191	112	39	20	32	7	14	copy fasta	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	t0003	191	12	0	0	11	0	1	copy fasta	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	t0004	191	2	0	0	2	0	0	copy fasta	CCL26	chr7	75764538	75777211
CCL27_chr9_34656890_34667657	1/1	t0001	79	382	90	76	154	14	46	copy fasta	CCL27	chr9	34656890	34667657
CCL28_chr5_43374193_43417391	0/0	t0001	2743	132	31	35	38	8	20	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	1/1	t0002	2743	118	10	18	68	4	16	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0003	2744	21	16	2	0	0	3	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0004	2743	15	0	1	13	0	1	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0005	2741	8	7	1	0	0	0	copy fasta	CCL28	chr5	43374193	43417391