JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCL28_chr5_43374193_43417391	0/0	t0006	2743	7	7	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0007	2743	5	5	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0008	2743	4	4	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0009	2742	4	0	0	4	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0010	2743	3	3	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0011	2743	2	0	2	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0012	2741	2	2	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0013	2743	1	1	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0014	2743	1	0	0	1	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0015	2743	1	1	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0016	2743	1	1	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	t0017	2743	1	0	1	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL2_chr17_34250285_34262203	1/1	t0001	442	254	68	47	94	11	32	copy fasta	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	t0002	442	174	20	34	101	5	14	copy fasta	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	t0003	442	4	4	0	0	0	0	copy fasta	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	t0004	442	1	0	0	1	0	0	copy fasta	CCL2	chr17	34250285	34262203
CCL2_chr17_34250285_34262203	0/0	t0005	442	1	0	1	0	0	0	copy fasta	CCL2	chr17	34250285	34262203
CCL3L3_chr17_36189869_36201758	0/0	t0001	503	70	10	21	32	1	6	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	t0002	503	64	4	9	33	5	13	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	t0003	503	16	0	4	10	0	2	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	t0004	503	6	3	1	1	0	1	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	t0005	503	1	0	1	0	0	0	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	t0006	503	1	1	0	0	0	0	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3_chr17_36083256_36095143	0/1	t0001	502	263	66	40	121	10	25	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0002	502	87	2	11	59	6	9	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0003	502	14	8	1	3	0	2	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0004	502	3	0	0	1	0	2	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0005	502	3	3	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0006	502	3	3	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0007	502	2	2	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0008	502	2	2	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0009	502	1	0	0	1	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0010	502	1	1	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0011	502	1	0	0	1	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	t0012	502	1	1	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL4L2_chr17_36206063_36217873	0/0	t0001	530	71	11	21	26	3	10	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	t0002	530	48	5	11	24	1	7	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	t0003	530	15	0	2	12	0	1	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	t0004	530	13	0	0	10	0	3	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	t0005	530	7	1	0	2	2	2	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	t0006	530	1	0	0	0	0	1	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	t0007	530	1	1	0	0	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4_chr17_36098827_36110614	0/1	t0001	382	378	62	78	183	18	36	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	t0002	382	18	18	0	0	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	t0003	382	9	8	1	0	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	t0004	382	4	0	0	3	0	1	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	t0005	382	1	1	0	0	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	t0006	382	1	0	1	0	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	t0007	382	1	0	0	0	0	1	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	t0008	382	1	1	0	0	0	0	copy fasta	CCL4	chr17	36098827	36110614