JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCL5_chr17_35866491_35885360	0/1	t0001	942	211	35	39	99	12	25	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0002	941	50	3	13	31	2	1	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0003	941	21	1	2	17	0	1	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0004	943	20	15	0	1	0	4	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0005	943	18	2	3	12	0	1	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0006	940	16	13	3	0	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0007	942	12	3	3	6	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0008	942	6	4	2	0	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0009	940	5	1	1	1	0	2	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0010	944	4	1	0	0	0	3	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0011	942	3	2	0	0	0	1	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0012	941	2	0	0	2	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0013	944	2	2	0	0	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0014	942	1	0	0	1	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0015	942	1	0	0	1	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0016	942	1	1	0	0	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0017	943	1	1	0	0	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	t0018	942	1	0	0	1	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL7_chr17_34265221_34277242	1/1	t0001	511	419	87	78	195	15	42	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	t0002	511	4	1	2	0	1	0	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	t0003	511	4	4	0	0	0	0	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	t0004	511	1	0	0	1	0	0	copy fasta	CCL7	chr17	34265221	34277242
CCL8_chr17_34314435_34326402	1/1	t0001	563	416	86	72	200	16	40	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	t0002	563	2	0	2	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	t0003	563	1	0	0	1	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	t0004	563	1	1	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	t0005	563	1	1	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	t0006	563	1	1	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	t0007	563	1	1	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	t0008	563	1	0	0	1	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCM2L_chr20_32005438_32037180	1/1	t0001	884	164	20	53	59	13	17	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	t0002	884	122	63	19	27	3	10	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	t0003	884	4	4	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	t0004	884	3	0	3	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	t0005	884	3	3	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	t0006	884	1	0	1	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	t0007	884	1	0	0	0	0	1	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	t0008	884	1	0	0	0	0	1	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	t0009	884	1	0	0	0	0	1	copy fasta	CCM2L	chr20	32005438	32037180
CCM2_chr7_44995201_45081453	1/1	t0001	530	228	57	42	88	12	27	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	t0002	530	81	20	28	20	4	9	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	t0003	530	2	2	0	0	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	t0004	530	2	0	2	0	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	t0005	530	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	t0006	530	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	t0007	530	1	1	0	0	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCN1_chr1_85575761_85588950	0/0	t0001	1133	272	54	51	128	9	30	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	1/1	t0002	1133	177	32	31	94	8	10	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	t0003	1133	8	8	0	0	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	t0004	1133	2	2	0	0	0	0	copy fasta	CCN1	chr1	85575761	85588950