JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCN1_chr1_85575761_85588950	0/0	t0005	1133	1	0	1	0	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	t0006	1133	1	1	0	0	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	t0007	1133	1	0	1	0	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	t0008	1133	1	0	1	0	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	t0009	1151	1	1	0	0	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	t0010	1133	1	0	0	0	1	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	t0011	1133	1	0	1	0	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN2_chr6_131943176_131956372	1/0	t0001	1289	336	44	57	183	12	39	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0002	1287	66	22	13	24	4	3	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0003	1291	13	7	2	1	0	3	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0004	1289	10	9	1	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0005	1289	6	0	5	0	0	1	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/1	t0006	1291	6	4	0	1	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0007	1289	5	5	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0008	1289	1	1	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0009	1287	1	0	0	1	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0010	1291	1	1	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0011	1289	1	1	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0012	1287	1	1	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	t0013	1289	1	1	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN3_chr8_119411446_119429434	1/1	t0001	1390	207	35	48	98	4	20	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0002	1390	41	9	2	22	0	8	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0003	1390	30	11	1	18	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0004	1390	29	10	11	1	4	3	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0005	1390	23	20	3	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0006	1390	16	0	3	13	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0007	1390	2	2	0	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0008	1390	1	1	0	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0009	1390	1	1	0	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0010	1390	1	1	0	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	t0011	1390	1	0	0	0	0	1	copy fasta	CCN3	chr8	119411446	119429434
CCN4_chr8_133186039_133236690	0/0	t0001	4087	193	22	26	111	7	27	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0002	4087	71	5	18	43	1	4	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/1	t0003	4087	47	2	16	12	6	10	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0004	4087	14	9	2	0	3	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0005	4087	8	7	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0006	4087	7	7	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	1/0	t0007	4087	5	3	0	0	1	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0008	4087	4	4	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0009	4087	4	4	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0010	4087	4	3	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0011	4087	4	4	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0012	4087	3	2	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0013	4087	2	2	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0014	4087	2	2	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0015	4087	2	2	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0016	4087	2	0	2	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0017	4087	2	0	2	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0018	4087	2	2	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0019	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690