JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCN4_chr8_133186039_133236690	0/0	t0020	4087	1	0	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0021	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0022	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0023	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0024	4071	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0025	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0026	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0027	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0028	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0029	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0030	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0031	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0032	4087	1	0	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0033	4087	1	0	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0034	4087	1	0	0	1	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0035	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0036	4087	1	0	0	0	0	1	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0037	4087	1	1	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	t0038	4087	1	0	0	1	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN5_chr20_44710369_44732811	1/0	t0001	527	243	61	43	99	10	29	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/1	t0002	527	117	24	18	55	6	13	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	t0003	527	73	4	20	48	0	1	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	t0004	527	6	5	1	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	t0005	527	3	0	0	0	0	3	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	t0006	527	1	0	0	1	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	t0007	527	1	0	0	0	0	1	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	t0008	527	1	0	0	0	0	1	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	t0009	527	1	0	0	1	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN6_chr6_112049104_112074686	1/1	t0001	321	329	63	61	155	11	37	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	t0002	321	101	21	15	53	3	9	copy fasta	CCN6	chr6	112049104	112074686
CCNA1_chr13_36427495_36447870	1/1	t0001	465	429	86	76	203	18	44	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	t0002	465	7	7	0	0	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	t0003	465	2	2	0	0	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	t0004	465	1	0	0	1	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	t0005	465	1	1	0	0	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA2_chr4_121811444_121828883	0/0	t0001	1450	122	2	27	74	5	14	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0002	1450	102	11	24	49	5	13	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	1/1	t0003	1450	67	13	16	20	6	10	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0004	1450	55	20	0	30	0	5	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0005	1450	40	30	9	1	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0006	1448	8	0	0	8	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0007	1450	4	4	0	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0008	1449	3	3	0	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0009	1450	2	2	0	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0010	1450	2	0	0	0	2	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0011	1450	2	0	1	0	0	1	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0012	1450	1	0	0	1	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0013	1450	1	0	0	0	0	1	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0014	1450	1	1	0	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	t0015	1450	1	1	0	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883