Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AASDHPPT_chr11_106072662_106103695	0/0	t0026	1838	1	1	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDH_chr4_56333290_56392491	1/0	t0001	285	289	51	36	170	10	21	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/1	t0002	289	79	25	24	8	6	15	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	t0003	285	8	8	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	t0004	285	3	3	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	t0005	285	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	t0006	285	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	t0007	285	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASS_chr7_122068549_122149249	0/0	t0001	3045	136	49	24	57	1	5	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	1/0	t0002	3045	99	4	23	52	6	13	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0003	3046	68	9	21	30	0	8	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0004	3045	35	9	3	23	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0005	3045	4	0	0	0	2	2	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0006	3045	4	4	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0007	3045	4	0	0	0	2	2	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0008	3045	3	3	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0009	3045	3	0	0	3	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0010	3045	3	3	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0011	3045	2	2	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0012	3045	2	0	0	0	0	2	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0013	3045	1	0	1	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0014	3045	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0015	3045	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0016	3046	1	0	0	0	0	1	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0017	3046	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0018	3046	1	0	1	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/1	t0019	3045	1	0	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0020	3045	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0021	3045	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0022	3045	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0023	3045	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0024	3045	1	0	0	0	0	1	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0025	3045	1	0	1	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0026	3045	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0027	3045	1	0	0	0	0	1	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0028	3045	1	0	0	0	0	1	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0029	3045	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0030	3045	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0031	3045	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0032	3045	1	0	0	0	1	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	t0033	3045	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AATF_chr17_36943954_37061871	0/0	t0001	380	166	71	31	46	5	13	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/1	t0002	380	57	2	10	33	2	9	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	t0003	380	6	6	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	t0004	380	6	6	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	t0005	380	5	1	2	0	1	1	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	t0006	380	2	0	0	2	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	t0007	380	1	0	0	1	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	t0008	380	1	0	1	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	t0009	380	1	0	0	0	0	1	copy fasta	AATF	chr17	36943954	37061871