JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCND1_chr11_69636156_69659474	0/0	t0018	3356	3	3	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0019	3353	2	0	1	0	0	1	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0020	3351	2	0	1	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0021	3351	2	0	0	2	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0022	3353	2	0	2	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0023	3353	2	0	2	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0024	3351	2	0	0	0	0	2	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0025	3353	2	0	0	0	0	2	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0026	3353	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0027	3353	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0028	3353	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0029	3353	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0030	3353	1	0	0	0	0	1	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0031	3353	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0032	3353	1	0	0	0	1	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0033	3353	1	0	1	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0034	3353	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0035	3354	1	0	0	0	0	1	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0036	3355	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0037	3353	1	0	0	0	0	1	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0038	3353	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0039	3357	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0040	3357	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0041	3352	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0042	3353	1	0	0	0	0	1	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0043	3353	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0044	3347	1	0	1	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0045	3347	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0046	3350	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0047	3352	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0048	3353	1	0	0	0	0	1	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0049	3353	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0050	3355	1	1	0	0	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	t0051	3354	1	0	0	0	1	0	copy fasta	CCND1	chr11	69636156	69659474
CCND2_chr12_4268762_4310353	0/0	t0001	5622	42	2	3	32	2	3	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0002	5623	39	3	12	23	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0003	5623	36	0	15	13	3	5	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0004	5622	30	2	6	17	1	4	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/1	t0005	5623	22	3	8	5	0	5	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0006	5622	21	9	1	9	0	2	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0007	5626	19	0	2	16	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0008	5623	19	4	10	5	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0009	5623	17	3	0	9	0	5	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0010	5623	15	4	3	2	4	2	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0011	5625	15	0	0	15	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0012	5622	13	4	0	5	0	4	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0013	5624	7	1	0	6	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0014	5623	7	0	1	5	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0015	5623	7	1	0	6	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0016	5624	6	1	3	0	1	1	copy fasta	CCND2	chr12	4268762	4310353