JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCND2_chr12_4268762_4310353	0/0	t0017	5621	5	5	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0018	5625	5	0	0	5	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0019	5623	5	0	0	4	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0020	5622	5	5	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0021	5624	5	2	2	0	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0022	5626	5	0	1	4	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0023	5625	4	4	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0024	5620	4	3	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0025	5623	4	0	2	2	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0026	5624	4	3	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0027	5623	3	0	0	3	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0028	5624	3	3	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	1/0	t0029	5624	3	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0030	5623	3	0	0	3	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0031	5624	3	3	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0032	5623	2	0	0	0	0	2	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0033	5624	2	0	0	1	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0034	5624	2	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0035	5624	2	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0036	5624	2	0	2	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0037	5622	2	0	0	0	0	2	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0038	5624	2	0	0	1	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0039	5623	2	1	0	0	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0040	5624	2	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0041	5624	2	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0042	5625	2	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0043	5622	2	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0044	5624	2	0	0	1	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0045	5623	2	0	0	2	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0046	5623	2	0	1	0	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0047	5623	2	0	0	2	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0048	5626	2	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0049	5624	2	0	2	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0050	5623	2	2	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0051	5622	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0052	5620	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0053	5622	1	0	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0054	5621	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0055	5622	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0056	5621	1	0	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0057	5624	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0058	5622	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0059	5625	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0060	5622	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0061	5624	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0062	5623	1	0	0	0	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0063	5623	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0064	5624	1	0	0	0	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0065	5625	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0066	5623	1	0	0	0	1	0	copy fasta	CCND2	chr12	4268762	4310353