JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCND2_chr12_4268762_4310353	0/0	t0067	5621	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0068	5624	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0069	5624	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0070	5624	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0071	5623	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0072	5624	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0073	5622	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0074	5622	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0075	5623	1	0	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0076	5612	1	0	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0077	5623	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0078	5623	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0079	5622	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0080	5623	1	0	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0081	5623	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0082	5624	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0083	5623	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0084	5624	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0085	5624	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0086	5625	1	0	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0087	5622	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0088	5624	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0089	5625	1	0	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0090	5625	1	0	1	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0091	5624	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0092	5628	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0093	5625	1	1	0	0	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0094	5622	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0095	5623	1	0	0	1	0	0	copy fasta	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	t0096	5622	1	0	0	0	0	1	copy fasta	CCND2	chr12	4268762	4310353
CCND3_chr6_41929952_41946808	0/0	t0001	1146	243	53	48	116	7	19	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0002	1147	110	34	14	50	3	9	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0003	1146	45	1	8	29	0	7	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/1	t0004	1147	37	0	9	17	2	8	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0005	1146	5	5	0	0	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0006	1149	4	0	1	0	2	1	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0007	1147	4	0	0	0	2	2	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0008	1145	2	2	0	0	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	1/0	t0009	1148	1	0	0	0	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0010	1146	1	1	0	0	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0011	1146	1	1	0	0	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0012	1146	1	1	0	0	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0013	1147	1	0	0	0	0	1	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	t0014	1146	1	0	0	0	0	1	copy fasta	CCND3	chr6	41929952	41946808
CCNDBP1_chr15_43180403_43202177	0/1	t0001	2432	167	26	32	76	5	27	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	1/0	t0002	2433	88	31	6	43	0	7	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0003	2432	29	0	9	19	0	1	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0004	2434	27	8	0	19	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0005	2432	9	0	6	0	3	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0006	2435	7	3	0	4	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177