JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNDBP1_chr15_43180403_43202177	0/0	t0007	2425	6	0	0	6	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0008	2433	5	5	0	0	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0009	2432	4	0	2	2	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0010	2431	4	1	1	2	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0011	2431	2	0	0	2	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0012	2434	2	2	0	0	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0013	2432	2	0	1	0	0	1	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0014	2431	1	0	0	1	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0015	2432	1	0	0	1	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0016	2476	1	0	0	1	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0017	2432	1	1	0	0	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0018	2433	1	1	0	0	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	t0019	2432	1	0	1	0	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNE1_chr19_29806991_29829312	1/1	t0001	722	238	62	43	89	14	28	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0002	722	149	33	23	74	2	17	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0003	701	30	0	4	25	0	1	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0004	722	2	0	2	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0005	722	2	2	0	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0006	722	1	0	0	1	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0007	722	1	0	0	1	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0008	722	1	0	1	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0009	722	1	1	0	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	t0010	722	1	0	1	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE2_chr8_94875224_94900201	1/1	t0001	1460	334	80	61	147	10	34	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0002	1460	4	4	0	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0003	1460	3	2	1	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0004	1460	3	0	0	3	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0005	1460	3	0	0	0	0	3	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0006	1460	1	0	0	1	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0007	1460	1	1	0	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0008	1460	1	0	0	0	0	1	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0009	1460	1	1	0	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	t0010	1460	1	0	0	1	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNF_chr16_2424447_2463854	1/1	t0001	1870	242	62	50	77	12	39	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0002	1870	15	14	1	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0003	1869	5	0	3	2	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0004	1870	4	4	0	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0005	1870	2	2	0	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0006	1870	2	2	0	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0007	1870	1	1	0	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0008	1870	1	0	0	0	0	1	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0009	1870	1	0	1	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0010	1870	1	0	1	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0011	1870	1	1	0	0	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	t0012	1870	1	0	0	1	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNG1_chr5_163432595_163450016	1/1	t0001	1557	354	79	65	161	8	39	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0002	1557	18	0	0	18	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0003	1557	18	11	5	0	0	2	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0004	1557	8	0	0	8	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0005	1557	7	0	0	7	0	0	copy fasta	CCNG1	chr5	163432595	163450016