JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNG1_chr5_163432595_163450016	0/0	t0006	1557	5	3	2	0	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0007	1557	3	0	0	3	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0008	1552	2	0	2	0	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0009	1557	1	0	0	0	0	1	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0010	1557	1	0	1	0	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0011	1557	1	0	0	1	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0012	1557	1	1	0	0	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0013	1557	1	0	1	0	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0014	1557	1	1	0	0	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	t0015	1552	1	1	0	0	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG2_chr4_77152207_77175060	1/0	t0001	4437	149	15	28	74	9	22	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/1	t0002	4437	133	6	29	79	5	13	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0003	4437	24	2	6	10	2	4	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0004	4435	16	10	2	0	2	2	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0005	4437	11	11	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0006	4437	9	9	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0007	4437	8	8	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0008	4437	8	8	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0009	4437	8	0	0	8	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0010	4437	5	5	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0011	4437	5	0	0	5	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0012	4437	5	2	3	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0013	4440	5	0	0	5	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0014	4437	4	1	3	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0015	4432	3	0	1	0	0	2	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0016	4433	3	0	0	3	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0017	4437	3	3	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0018	4436	3	2	1	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0019	4437	3	3	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0020	4437	3	0	3	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0021	4435	2	2	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0022	4437	1	0	0	0	0	1	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0023	4437	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0024	4437	1	0	0	1	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0025	4437	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0026	4435	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0027	4433	1	0	0	1	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0028	4437	1	0	0	1	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0029	4437	1	0	0	1	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0030	4437	1	0	0	0	0	1	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0031	4437	1	0	0	1	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0032	4435	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0033	4437	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0034	4437	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0035	4437	1	0	0	0	0	1	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0036	4437	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0037	4437	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0038	4437	1	0	0	1	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	t0039	4437	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNH_chr5_87389274_87417930	1/1	t0001	309	295	63	52	133	10	35	copy fasta	CCNH	chr5	87389274	87417930