JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNH_chr5_87389274_87417930	0/0	t0002	309	23	0	1	21	0	1	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	t0003	309	20	14	4	0	2	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	t0004	309	8	0	3	5	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	t0005	313	3	3	0	0	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	t0006	309	2	0	0	2	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	t0007	309	2	2	0	0	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	t0008	309	1	0	0	1	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNI2_chr5_132742426_132759403	0/0	t0001	1502	138	15	16	98	2	7	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	1/1	t0002	1504	81	5	22	29	7	16	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0003	1505	30	3	7	14	0	6	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0004	1503	20	3	3	14	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0005	1506	13	4	3	5	0	1	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0006	1507	10	9	1	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0007	1501	9	7	0	2	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0008	1506	7	7	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0009	1505	7	6	1	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0010	1508	5	5	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0011	1507	5	3	2	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0012	1502	4	3	1	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0013	1506	4	2	2	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0014	1506	3	3	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0015	1505	3	0	0	3	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0016	1507	3	3	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0017	1507	2	2	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0018	1504	2	2	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0019	1506	2	2	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0020	1506	2	2	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0021	1505	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0022	1506	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0023	1506	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0024	1504	1	0	0	1	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0025	1505	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0026	1533	1	0	0	1	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0027	1505	1	0	0	0	1	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0028	1507	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0029	1502	1	0	0	1	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0030	1506	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0031	1507	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	t0032	1508	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI_chr4_77042155_77080989	1/1	t0001	1626	225	39	52	88	10	34	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0002	1619	62	14	10	27	3	8	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0003	1638	20	0	0	20	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0004	1626	12	0	0	12	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0005	1626	11	11	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0006	1626	7	7	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0007	1626	7	5	1	1	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0008	1627	6	0	0	6	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0009	1638	5	0	0	5	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0010	1625	3	0	2	1	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0011	1626	3	0	0	3	0	0	copy fasta	CCNI	chr4	77042155	77080989