JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNI_chr4_77042155_77080989	0/0	t0012	1619	2	1	1	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0013	1626	2	2	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0014	1626	2	2	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0015	1619	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0016	1620	1	0	0	0	0	1	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0017	1619	1	0	0	0	0	1	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0018	1626	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0019	1625	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0020	1619	1	0	0	1	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0021	1626	1	0	0	1	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0022	1626	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0023	1627	1	0	0	1	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0024	1620	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0025	1620	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0026	1620	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0027	1627	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0028	1626	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0029	1626	1	0	1	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0030	1638	1	0	0	1	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0031	1626	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0032	1626	1	1	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0033	1626	1	0	1	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0034	1626	1	0	0	0	1	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	t0035	1626	1	0	0	1	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNJL_chr5_160244083_160317564	1/1	t0001	4546	109	23	28	45	3	8	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0002	4546	36	3	11	12	3	7	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0003	4530	34	6	1	22	0	5	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0004	4550	31	6	5	15	2	3	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0005	4542	20	0	1	18	0	1	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0006	4550	15	3	5	5	1	1	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0007	4542	10	7	2	0	0	1	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0008	4554	9	3	0	4	0	2	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0009	4534	8	6	2	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0010	4526	5	2	3	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0011	4530	5	3	2	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0012	4538	4	0	3	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0013	4530	3	2	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0014	4530	3	2	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0015	4538	3	2	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0016	4534	2	0	0	2	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0017	4546	2	0	0	2	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0018	4534	2	2	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0019	4531	2	0	0	2	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0020	4546	2	1	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0021	4546	2	0	0	0	2	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0022	4546	2	2	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0023	4530	2	0	0	0	0	2	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0024	4530	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0025	4538	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0026	4538	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564