JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNJL_chr5_160244083_160317564	0/0	t0027	4550	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0028	4538	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0029	4546	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0030	4542	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0031	4530	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0032	4550	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0033	4526	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0034	4550	1	0	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0035	4550	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0036	4542	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0037	4550	1	0	0	0	0	1	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0038	4538	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0039	4546	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0040	4530	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0041	4546	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0042	4526	1	0	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0043	4534	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0044	4542	1	0	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0045	4530	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0046	4546	1	0	0	0	1	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0047	4546	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0048	4546	1	0	0	0	0	1	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0049	4554	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	t0050	4531	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJ_chr10_96038583_96065870	1/0	t0001	2808	82	30	22	15	3	11	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0002	2805	79	7	1	62	0	9	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0003	2806	55	8	0	44	0	3	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0004	2804	37	2	17	5	8	5	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0005	2807	35	22	3	7	0	3	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/1	t0006	2808	31	14	11	0	3	2	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0007	2807	20	0	3	17	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0008	2806	17	0	0	17	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0009	2807	13	0	6	1	1	5	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0010	2807	12	0	4	8	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0011	2806	5	3	1	1	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0012	2808	4	1	0	0	0	3	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0013	2808	3	0	0	3	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0014	2808	2	0	1	0	0	1	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0015	2808	2	0	0	2	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0016	2804	2	0	2	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0017	2807	2	1	1	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0018	2804	2	0	2	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0019	2807	1	0	1	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0020	2807	1	0	0	1	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0021	2806	1	0	0	1	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0022	2808	1	0	0	1	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0023	2808	1	1	0	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0024	2806	1	0	0	0	0	1	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0025	2808	1	1	0	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0026	2805	1	0	0	1	0	0	copy fasta	CCNJ	chr10	96038583	96065870