JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNJ_chr10_96038583_96065870	0/0	t0027	2808	1	0	0	0	0	1	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0028	2807	1	1	0	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0029	2808	1	0	0	0	1	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0030	2808	1	1	0	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0031	2806	1	1	0	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0032	2808	1	1	0	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	t0033	2808	1	0	1	0	0	0	copy fasta	CCNJ	chr10	96038583	96065870
CCNK_chr14_99476409_99517440	1/1	t0001	1782	289	60	52	126	16	33	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0002	1781	9	9	0	0	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0003	1783	9	8	1	0	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0004	1782	6	5	1	0	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0005	1782	5	0	0	5	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0006	1782	2	0	0	0	0	2	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0007	1782	2	0	2	0	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0008	1782	2	2	0	0	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0009	1782	1	0	0	1	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	t0010	1782	1	0	0	0	0	1	copy fasta	CCNK	chr14	99476409	99517440
CCNL1_chr3_157142553_157165147	1/1	t0001	742	410	98	70	182	17	41	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	t0002	742	7	0	0	7	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	t0003	742	2	0	0	0	0	2	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	t0004	742	2	0	1	1	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	t0005	742	1	0	0	0	1	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	t0006	742	1	0	0	1	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	t0007	742	1	0	0	1	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	t0008	742	1	0	1	0	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	t0009	742	1	0	0	0	0	1	copy fasta	CCNL1	chr3	157142553	157165147
CCNL2_chr1_1380711_1404335	0/1	t0001	1551	235	27	57	104	10	36	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0002	1546	50	9	5	31	0	5	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	1/0	t0003	1550	41	29	3	5	2	1	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0004	1550	10	10	0	0	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0005	1549	10	5	1	3	1	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0006	1550	4	4	0	0	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0007	1550	3	2	1	0	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0008	1550	2	2	0	0	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0009	1551	2	0	0	0	1	1	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0010	1550	1	1	0	0	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0011	1551	1	0	0	0	1	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0012	1551	1	1	0	0	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0013	1551	1	0	0	0	1	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0014	1546	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0015	1551	1	0	0	0	0	1	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0016	1551	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0017	1551	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0018	1551	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0019	1551	1	0	0	0	0	1	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0020	1551	1	0	1	0	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0021	1551	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	t0022	1551	1	0	0	0	0	1	copy fasta	CCNL2	chr1	1380711	1404335
CCNO_chr5_55226152_55238608	1/1	t0001	309	365	80	59	169	12	43	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	t0002	309	14	1	13	0	0	0	copy fasta	CCNO	chr5	55226152	55238608