JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNO_chr5_55226152_55238608	0/0	t0003	309	6	5	0	0	0	1	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	t0004	309	2	2	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	t0005	309	1	0	0	1	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNP_chr19_40217208_40231689	0/0	t0001	893	224	56	51	78	10	29	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	1/1	t0002	893	109	12	20	65	8	2	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0003	893	63	23	3	36	0	1	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0004	893	6	6	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0005	893	4	0	0	4	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0006	893	2	0	0	0	0	2	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0007	893	2	2	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0008	893	1	0	0	1	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0009	893	1	1	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0010	893	1	0	0	1	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	t0011	893	1	0	0	1	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNQ_chrX_153582925_153604139	1/1	t0001	507	287	73	38	137	7	30	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	t0002	507	10	0	8	0	0	2	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	t0003	507	3	3	0	0	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	t0004	506	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	t0005	506	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNT1_chr12_48683458_48721707	0/0	t0001	4609	123	20	12	80	1	10	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	1/1	t0002	4608	121	32	26	46	3	12	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0003	4608	28	9	7	0	5	7	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0004	4607	17	1	0	15	0	1	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0005	4609	14	0	9	5	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0006	4609	12	0	2	8	0	2	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0007	4609	12	1	7	0	4	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0008	4608	8	8	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0009	4605	7	0	0	7	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0010	4608	6	6	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0011	4608	5	4	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0012	4608	4	3	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0013	4609	3	0	0	3	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0014	4604	3	2	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0015	4609	2	0	0	2	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0016	4608	2	0	0	0	0	2	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0017	4608	2	2	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0018	4608	2	2	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0019	4609	1	0	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0020	4608	1	0	0	0	0	1	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0021	4604	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0022	4608	1	0	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0023	4608	1	0	0	1	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0024	4609	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0025	4608	1	0	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0026	4608	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0027	4608	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0028	4609	1	0	0	0	0	1	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0029	4608	1	0	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0030	4608	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0031	4609	1	0	0	1	0	0	copy fasta	CCNT1	chr12	48683458	48721707