JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNT1_chr12_48683458_48721707	0/0	t0032	4608	1	0	0	0	1	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	t0033	4608	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT2_chr2_134913822_134964342	0/0	t0001	4723	111	18	22	58	0	13	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	1/0	t0002	4728	90	23	24	28	6	8	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0003	4723	55	3	4	48	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/1	t0004	4719	54	8	15	20	1	9	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0005	4723	44	9	0	26	0	9	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0006	4723	13	0	3	10	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0007	4723	6	6	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0008	4723	5	0	2	0	2	1	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0009	4728	3	3	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0010	4723	3	3	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0011	4719	3	3	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0012	4728	2	2	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0013	4728	1	1	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0014	4719	1	0	0	0	0	1	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0015	4723	1	0	0	1	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0016	4723	1	1	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0017	4723	1	0	1	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0018	4723	1	0	1	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0019	4723	1	0	0	1	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0020	4723	1	0	0	0	1	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0021	4723	1	0	0	0	0	1	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0022	4728	1	1	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0023	4728	1	1	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0024	4723	1	0	0	1	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0025	4719	1	1	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0026	4728	1	1	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	t0027	4728	1	0	0	1	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNYL1_chr2_207706640_207761174	0/1	t0001	2735	207	43	33	101	7	22	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	1/0	t0002	2734	109	17	26	45	6	14	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0003	2734	6	6	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0004	2735	5	0	3	1	0	1	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0005	2734	4	4	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0006	2735	3	3	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0007	2735	3	3	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0008	2735	2	2	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0009	2735	2	2	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0010	2735	1	0	1	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0011	2735	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0012	2735	1	0	0	1	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0013	2735	1	0	0	0	0	1	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0014	2734	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0015	2734	1	0	0	0	1	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0016	2734	1	0	1	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0017	2734	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0018	2734	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0019	2734	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0020	2734	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	t0021	2734	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174