JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCNYL1_chr2_207706640_207761174	0/0	t0022	2735	1	1	0	0	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNY_chr10_35331509_35577667	0/1	t0001	4044	120	29	16	52	3	19	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0002	4043	103	23	17	54	1	8	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0003	4044	12	0	6	6	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0004	4043	11	10	1	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0005	4042	11	0	5	0	2	4	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0006	4044	8	5	2	1	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0007	4044	5	5	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0008	4040	4	4	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0009	4040	4	4	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0010	4043	2	0	2	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0011	4043	2	0	0	1	0	1	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0012	4043	2	2	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0013	4043	2	0	1	1	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0014	4043	1	1	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0015	4040	1	1	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	1/0	t0016	4043	1	0	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0017	4044	1	0	1	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0018	4043	1	1	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0019	4043	1	1	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0020	4043	1	0	0	1	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0021	4043	1	0	0	1	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0022	4043	1	0	0	1	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	t0023	4043	1	0	1	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCP110_chr16_19518942_19558408	1/1	t0001	2300	130	7	26	67	4	24	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0002	2298	78	13	10	52	1	2	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0003	2304	54	8	13	24	1	8	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0004	2299	43	32	9	0	1	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0005	2298	10	10	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0006	2298	10	0	0	9	0	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0007	2299	9	7	2	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0008	2300	8	0	0	8	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0009	2302	7	7	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0010	2304	6	0	0	6	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0011	2301	6	1	1	3	0	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0012	2298	4	0	3	0	1	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0013	2305	4	0	1	3	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0014	2305	2	0	0	2	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0015	2300	2	1	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0016	2298	2	2	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0017	2302	1	1	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0018	2304	1	0	0	0	0	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0019	2304	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0020	2300	1	0	1	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0021	2300	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0022	2299	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0023	2300	1	1	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0024	2300	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0025	2299	1	1	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	t0026	2301	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408