JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCP110_chr16_19518942_19558408	0/0	t0027	2300	1	1	0	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCPG1_chr15_55350239_55413359	1/1	t0001	1130	266	29	56	128	15	36	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0002	1130	28	23	2	2	0	1	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0003	1130	22	13	4	0	1	4	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0004	1130	12	0	2	10	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0005	1130	12	12	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0006	1130	6	6	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0007	1130	4	4	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0008	1130	2	2	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0009	1130	1	1	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	t0010	1130	1	0	0	0	0	1	copy fasta	CCPG1	chr15	55350239	55413359
CCR10_chr17_42673889_42686843	1/1	t0001	685	362	82	76	152	10	40	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	t0002	685	3	3	0	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	t0003	685	1	1	0	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR1_chr3_46196711_46213313	1/1	t0001	1579	225	42	45	113	9	14	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0002	1580	31	3	6	13	0	9	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0003	1576	27	0	6	11	0	10	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0004	1579	9	1	5	0	2	1	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0005	1575	8	7	0	0	1	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0006	1579	8	8	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0007	1579	7	0	0	7	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0008	1579	4	4	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0009	1579	4	1	2	0	0	1	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0010	1580	4	3	1	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0011	1579	3	3	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0012	1579	3	3	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0013	1580	2	0	0	1	0	1	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0014	1580	2	0	1	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0015	1579	2	0	0	2	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0016	1579	2	2	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0017	1579	2	2	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0018	1575	1	1	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0019	1579	1	0	1	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0020	1575	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0021	1579	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0022	1579	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0023	1579	1	1	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0024	1579	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0025	1579	1	0	1	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0026	1579	1	0	1	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0027	1579	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0028	1579	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0029	1580	1	1	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0030	1579	1	1	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0031	1580	1	1	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0032	1579	1	1	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0033	1576	1	0	1	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	t0034	1579	1	1	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR2_chr3_46349111_46365940	1/1	t0001	2449	169	18	31	88	9	21	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0002	2449	99	10	22	57	1	9	copy fasta	CCR2	chr3	46349111	46365940