JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCR2_chr3_46349111_46365940	0/0	t0003	2449	84	9	10	57	4	4	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0004	2449	23	22	1	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0005	2449	21	19	2	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0006	2449	21	0	6	7	0	8	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0007	2449	4	4	0	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0008	2449	3	3	0	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0009	2449	2	0	0	2	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0010	2449	2	0	0	0	0	2	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0011	2449	1	0	1	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0012	2449	1	0	0	1	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0013	2449	1	1	0	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0014	2449	1	1	0	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0015	2449	1	0	0	1	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0016	2449	1	0	0	1	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0017	2449	1	1	0	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0018	2449	1	0	1	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0019	2449	1	1	0	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	t0020	2449	1	1	0	0	0	0	copy fasta	CCR2	chr3	46349111	46365940
CCR3_chr3_46237460_46271706	1/1	t0001	571	406	84	74	194	14	38	copy fasta	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	t0002	571	1	1	0	0	0	0	copy fasta	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	t0003	571	1	1	0	0	0	0	copy fasta	CCR3	chr3	46237460	46271706
CCR4_chr3_32946644_32961349	1/1	t0001	1943	142	15	43	55	9	18	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0002	1942	72	12	10	46	0	4	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0003	1944	42	10	12	12	2	6	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0004	1937	30	0	0	29	1	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0005	1941	14	11	2	0	0	1	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0006	1943	13	1	1	9	0	2	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0007	1945	9	1	3	2	0	3	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0008	1945	6	4	0	2	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0009	1942	6	6	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0010	1943	5	5	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0011	1944	5	2	1	1	0	1	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0012	1942	5	1	0	4	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0013	1942	5	4	1	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0014	1942	4	4	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0015	1942	3	2	1	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0016	1938	3	0	0	3	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0017	1943	2	0	0	2	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0018	1943	2	2	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0019	1943	2	0	0	0	0	2	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0020	1942	2	0	0	2	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0021	1942	2	0	0	2	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0022	1944	1	0	0	1	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0023	1942	1	1	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0024	1943	1	0	1	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0025	1944	1	1	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0026	1944	1	1	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0027	1944	1	1	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0028	1941	1	1	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0029	1942	1	0	0	1	0	0	copy fasta	CCR4	chr3	32946644	32961349