JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCR4_chr3_32946644_32961349	0/0	t0030	1942	1	0	1	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0031	1943	1	0	1	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0032	1943	1	1	0	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0033	1943	1	0	0	1	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0034	1943	1	0	1	0	0	0	copy fasta	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	t0035	1943	1	0	0	0	0	1	copy fasta	CCR4	chr3	32946644	32961349
CCR5_chr3_46365946_46381206	1/1	t0001	2300	201	30	44	101	7	17	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0002	2300	122	5	16	86	6	9	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0003	2300	26	24	1	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0004	2300	22	0	6	7	0	9	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0005	2300	17	15	2	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0006	2300	4	4	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0007	2300	3	0	1	0	0	2	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0008	2300	3	0	2	0	1	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0009	2300	2	2	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0010	2300	2	0	0	1	0	1	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0011	2300	2	2	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0012	2300	2	2	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0013	2300	2	0	1	0	0	1	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0014	2300	1	1	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0015	2300	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0016	2300	1	0	1	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0017	2300	1	0	0	0	0	1	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0018	2300	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0019	2300	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0020	2300	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0021	2300	1	0	0	0	0	1	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0022	2300	1	1	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0023	2300	1	0	0	0	0	1	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0024	2300	1	1	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0025	2300	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0026	2300	1	1	0	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	t0027	2284	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR6_chr6_167118096_167144141	0/1	t0001	2013	121	2	15	80	6	17	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0002	2012	110	6	25	64	6	9	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0003	2012	41	0	5	32	0	4	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0004	2012	38	14	6	14	0	4	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0005	2012	17	12	1	2	1	1	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0006	2011	14	11	2	0	1	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0007	2011	14	13	1	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0008	2012	13	0	2	9	0	2	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0009	2011	13	12	1	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0010	2012	11	0	4	0	2	5	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0011	2011	6	0	0	5	1	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0012	2011	5	3	2	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0013	2013	5	1	0	4	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0014	2014	5	0	0	5	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0015	2011	4	0	1	2	0	1	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	1/0	t0016	2012	4	3	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0017	2013	4	2	2	0	0	0	copy fasta	CCR6	chr6	167118096	167144141