JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCR6_chr6_167118096_167144141	0/0	t0018	2011	3	1	1	0	0	1	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0019	2012	2	1	1	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0020	2012	2	0	0	2	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0021	2012	2	2	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0022	2011	2	0	0	0	0	2	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0023	2012	2	0	1	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0024	2012	2	2	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0025	2012	1	0	1	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0026	2014	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0027	2013	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0028	2013	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0029	2012	1	0	1	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0030	2013	1	0	1	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0031	2012	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0032	2011	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0033	2012	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0034	2011	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0035	2011	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0036	2013	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0037	2012	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0038	2011	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0039	2013	1	0	0	0	1	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0040	2013	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0041	2013	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0042	2013	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0043	2009	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	t0044	2012	1	0	1	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR7_chr17_40548769_40570472	1/1	t0001	1037	364	75	68	172	17	30	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0002	1038	25	12	1	3	1	8	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0003	1037	8	6	2	0	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0004	1038	1	1	0	0	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0005	1037	1	0	0	0	0	1	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0006	1037	1	0	0	0	0	1	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0007	1037	1	0	0	1	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0008	1037	1	1	0	0	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0009	1037	1	0	0	1	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0010	1037	1	0	0	1	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0011	1037	1	0	1	0	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0012	1037	1	0	0	1	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0013	1037	1	0	0	1	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	t0014	1037	1	1	0	0	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR8_chr3_39324709_39338680	1/1	t0001	417	396	94	72	168	16	44	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	t0002	417	1	0	1	0	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	t0003	417	1	0	1	0	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR9_chr3_45881543_45908174	1/1	t0001	1418	364	49	60	206	14	33	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0002	1418	34	29	4	0	0	1	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0003	1418	7	0	7	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0004	1418	3	3	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0005	1418	3	3	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0006	1418	2	2	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174