JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCR9_chr3_45881543_45908174	0/0	t0007	1418	2	2	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0008	1418	1	0	1	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0009	1418	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0010	1418	1	1	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0011	1418	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0012	1418	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0013	1418	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0014	1418	1	1	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0015	1418	1	1	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	t0016	1418	1	1	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCRL2_chr3_46402259_46414523	1/1	t0001	666	338	30	61	192	10	43	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	t0002	666	29	16	9	0	4	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	t0003	666	27	24	3	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	t0004	666	19	18	1	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	t0005	666	3	0	2	0	0	1	copy fasta	CCRL2	chr3	46402259	46414523
CCSAP_chr1_229316015_229348047	1/0	t0001	4405	146	27	26	70	3	19	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/1	t0002	4406	144	12	32	81	6	12	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0003	4405	52	11	10	21	3	7	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0004	4398	16	0	7	5	0	4	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0005	4405	12	12	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0006	4405	12	12	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0007	4405	6	1	1	3	0	1	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0008	4406	4	3	1	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0009	4404	4	0	1	3	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0010	4406	3	1	2	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0011	4406	3	0	0	3	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0012	4405	3	3	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0013	4405	3	0	0	3	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0014	4406	3	1	0	0	0	2	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0015	4405	2	2	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0016	4406	2	0	0	2	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0017	4406	1	0	1	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0018	4404	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0019	4405	1	0	1	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0020	4405	1	0	0	0	1	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0021	4405	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0022	4406	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0023	4406	1	0	0	0	0	1	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0024	4406	1	0	0	1	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0025	4406	1	0	0	1	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0026	4406	1	0	0	1	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0027	4406	1	0	0	0	1	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0028	4405	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0029	4404	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0030	4405	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0031	4405	1	0	1	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0032	4405	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0033	4398	1	0	1	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0034	4405	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0035	4405	1	0	0	1	0	0	copy fasta	CCSAP	chr1	229316015	229348047