JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCSAP_chr1_229316015_229348047	0/0	t0036	4405	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	t0037	4405	1	0	0	1	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSER1_chr4_90122394_91610295	0/0	t0001	6718	7	5	0	0	0	2	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0002	6718	4	4	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0003	6718	4	3	1	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0004	6718	3	3	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0005	6718	2	2	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0006	6718	2	1	0	0	0	1	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0007	6714	2	2	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0008	6718	2	2	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0009	6718	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0010	6718	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0011	6718	1	0	1	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0012	6718	1	0	1	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0013	6718	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0014	6718	1	0	1	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0015	6718	1	0	1	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0016	6718	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0017	6718	1	0	0	0	0	1	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0018	6718	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0019	6714	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	t0020	6714	1	0	1	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER2_chr10_84323589_84523517	0/0	t0001	4510	89	2	24	47	4	12	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/1	t0002	4510	66	35	13	10	3	4	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0003	4514	55	1	13	30	0	11	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	1/0	t0004	4510	49	14	5	27	0	2	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0005	4510	25	0	6	16	2	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0006	4510	16	2	2	12	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0007	4510	14	13	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0008	4510	12	0	0	12	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0009	4510	9	0	7	0	1	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0010	4510	6	6	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0011	4510	5	0	0	5	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0012	4510	5	0	1	0	0	4	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0013	4510	2	2	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0014	4510	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0015	4510	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0016	4514	1	0	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0017	4514	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0018	4510	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0019	4510	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0020	4510	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0021	4510	1	0	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0022	4510	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0023	4510	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0024	4510	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0025	4510	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0026	4510	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0027	4510	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0028	4510	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517