JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCSER2_chr10_84323589_84523517	0/0	t0029	4510	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	t0030	4510	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCS_chr11_66588185_66611019	1/1	t0001	242	399	85	66	184	16	46	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	t0002	242	2	0	0	2	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	t0003	242	1	1	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	t0004	242	1	1	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	t0005	242	1	1	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCT2_chr12_69580459_69606570	1/1	t0001	309	314	72	49	158	11	22	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	t0002	309	76	9	19	38	3	7	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	t0003	309	17	15	2	0	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	t0004	309	1	1	0	0	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	t0005	309	1	1	0	0	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	t0006	309	1	0	0	0	0	1	copy fasta	CCT2	chr12	69580459	69606570
CCT3_chr1_156303968_156343292	1/1	t0001	340	287	77	50	120	9	29	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	t0002	338	79	4	22	39	4	10	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	t0003	340	18	0	0	17	0	1	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	t0004	340	3	0	2	0	1	0	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	t0005	338	2	2	0	0	0	0	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	t0006	340	2	2	0	0	0	0	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	t0007	340	1	1	0	0	0	0	copy fasta	CCT3	chr1	156303968	156343292
CCT4_chr2_61863085_61893656	1/0	t0001	757	354	62	64	180	14	33	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/1	t0002	757	53	24	8	6	4	10	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	t0003	757	3	0	2	0	0	1	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	t0004	747	2	0	2	0	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	t0005	684	1	1	0	0	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	t0006	757	1	1	0	0	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT5_chr5_10245280_10271389	0/1	t0001	1673	150	5	17	111	5	11	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0002	1673	74	17	20	14	9	14	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0003	1668	58	40	13	3	0	2	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	1/0	t0004	1668	49	0	9	23	1	15	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0005	1673	9	8	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0006	1673	6	6	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0007	1669	4	3	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0008	1668	4	2	2	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0009	1673	3	0	2	0	1	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0010	1668	3	3	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0011	1673	2	2	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0012	1668	2	1	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0013	1673	1	0	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0014	1673	1	1	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0015	1673	1	0	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0016	1673	1	0	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0017	1673	1	0	0	1	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0018	1673	1	0	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0019	1673	1	0	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0020	1668	1	0	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0021	1668	1	1	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	t0022	1668	1	1	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT6A_chr7_56046765_56068989	1/1	t0001	989	388	83	76	173	16	38	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	t0002	989	28	9	2	17	0	0	copy fasta	CCT6A	chr7	56046765	56068989