JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCT6A_chr7_56046765_56068989	0/0	t0003	989	4	0	0	4	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	t0004	989	4	0	0	3	0	1	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	t0005	989	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	t0006	989	1	0	0	0	0	1	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	t0007	989	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	t0008	989	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6B_chr17_34922861_34966460	1/1	t0001	255	365	88	69	155	15	36	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	t0002	255	35	2	1	25	1	6	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	t0003	255	1	1	0	0	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	t0004	255	1	1	0	0	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT7_chr2_73229308_73258005	1/1	t0001	216	267	88	44	93	15	25	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	t0002	216	109	10	24	63	3	9	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	t0003	216	1	0	0	1	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	t0004	216	1	0	0	1	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT8L2_chr22_16585751_16597810	1/1	t0001	387	370	90	75	158	12	33	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	t0002	387	55	0	3	43	0	9	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	t0003	387	2	2	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	t0004	387	1	0	0	1	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	t0005	387	1	1	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	t0006	387	1	0	0	0	0	1	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	t0007	387	1	1	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	t0008	387	1	0	0	0	0	1	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8_chr21_29051326_29078648	1/0	t0001	208	203	52	39	87	3	21	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	t0002	208	102	11	22	44	8	17	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/1	t0003	208	70	28	6	30	1	4	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	t0004	205	46	3	5	38	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	t0005	208	2	2	0	0	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	t0006	208	1	0	0	1	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCZ1B_chr7_6793937_6831275	0/0	t0001	366	113	22	23	55	7	6	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0002	366	111	17	19	60	4	11	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0003	366	76	4	8	48	3	13	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0004	366	16	8	6	1	0	1	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0005	366	13	0	11	0	0	2	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0006	366	11	7	0	3	0	1	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0007	366	2	1	1	0	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0008	366	2	0	0	2	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0009	366	2	0	0	0	0	2	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0010	366	2	0	0	2	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0011	366	1	1	0	0	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0012	366	1	0	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0013	366	1	1	0	0	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0014	366	1	1	0	0	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0015	366	1	0	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	t0016	366	1	0	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1_chr7_5893733_5931550	0/0	t0001	931	43	19	13	3	6	2	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0002	929	21	8	3	6	1	3	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0003	929	13	5	5	1	1	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0004	929	7	0	1	6	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0005	929	5	0	4	0	0	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0006	929	4	0	3	1	0	0	copy fasta	CCZ1	chr7	5893733	5931550