JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCZ1_chr7_5893733_5931550	0/0	t0007	929	3	1	0	1	0	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0008	929	2	1	1	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0009	929	2	2	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0010	927	2	2	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0011	929	2	2	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0012	929	1	1	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0013	929	1	0	0	1	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0014	931	1	1	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0015	931	1	1	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0016	931	1	0	1	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0017	929	1	0	1	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0018	929	1	1	0	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0019	929	1	0	1	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0020	929	1	0	1	0	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	t0021	931	1	0	0	1	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CD101_chr1_116996760_117041552	1/1	t0001	477	361	59	72	169	14	45	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	t0002	476	31	8	2	19	1	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	t0003	478	22	20	0	1	1	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	t0004	476	10	10	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	t0005	477	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	t0006	477	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD109_chr6_73691203_73833313	0/1	t0001	4695	74	7	14	44	3	5	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0002	4694	60	1	9	43	1	6	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0003	4694	47	24	2	16	0	5	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	1/0	t0004	4694	41	10	12	4	7	7	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0005	4694	11	0	2	8	0	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0006	4694	11	0	0	9	0	2	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0007	4696	10	0	2	6	0	2	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0008	4696	10	0	1	8	0	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0009	4695	9	6	0	3	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0010	4694	8	0	0	8	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0011	4694	7	0	4	3	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0012	4695	7	0	4	1	1	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0013	4697	7	7	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0014	4694	5	0	0	5	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0015	4696	4	4	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0016	4696	4	4	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0017	4694	3	2	1	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0018	4694	3	0	0	0	3	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0019	4695	2	0	0	2	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0020	4695	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0021	4694	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0022	4695	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0023	4695	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0024	4696	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0025	4693	2	0	2	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0026	4694	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0027	4694	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0028	4695	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0029	4696	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313