JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD109_chr6_73691203_73833313	0/0	t0030	4695	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0031	4695	1	0	1	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0032	4694	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0033	4697	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0034	4697	1	0	1	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0035	4694	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0036	4695	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0037	4696	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0038	4696	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0039	4694	1	0	0	0	1	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0040	4694	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0041	4696	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0042	4694	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0043	4695	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0044	4693	1	0	1	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0045	4695	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0046	4695	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0047	4696	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0048	4694	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0049	4695	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0050	4694	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0051	4696	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	t0052	4696	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD14_chr5_140626732_140638175	1/1	t0001	229	400	94	59	181	18	46	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	t0002	229	7	0	3	4	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	t0003	229	2	2	0	0	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	t0004	229	1	0	0	1	0	0	copy fasta	CD14	chr5	140626732	140638175
CD151_chr11_827952_843831	0/0	t0001	781	166	38	54	57	10	7	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0002	781	155	16	10	116	2	11	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/1	t0003	784	83	25	14	14	5	24	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0004	781	4	2	1	0	0	1	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0005	781	4	0	0	4	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0006	781	3	1	0	0	1	1	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0007	781	2	0	0	1	0	1	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0008	781	2	1	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0009	781	2	1	1	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0010	781	2	0	0	0	0	2	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	1/0	t0011	784	2	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0012	784	2	0	0	2	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0013	784	2	2	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0014	781	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0015	781	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0016	781	1	0	1	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0017	781	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0018	781	1	0	1	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0019	781	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0020	781	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0021	781	1	0	0	0	0	1	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0022	784	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0023	784	1	0	1	0	0	0	copy fasta	CD151	chr11	827952	843831