JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD151_chr11_827952_843831	0/0	t0024	784	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0025	784	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0026	784	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0027	784	1	1	0	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0028	784	1	0	1	0	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0029	784	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	t0030	784	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD160_chr1_145714499_145744288	1/1	t0001	1035	321	52	69	150	14	34	copy fasta	CD160	chr1	145714499	145744288
CD160_chr1_145714499_145744288	0/0	t0002	1035	13	12	1	0	0	0	copy fasta	CD160	chr1	145714499	145744288
CD160_chr1_145714499_145744288	0/0	t0003	1035	5	5	0	0	0	0	copy fasta	CD160	chr1	145714499	145744288
CD160_chr1_145714499_145744288	0/0	t0004	1035	1	1	0	0	0	0	copy fasta	CD160	chr1	145714499	145744288
CD163L1_chr12_7349960_7449153	1/0	t0001	222	262	55	37	146	6	17	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	t0002	222	94	39	19	21	3	12	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/1	t0003	222	27	0	10	4	5	7	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	t0004	222	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163_chr12_7465811_7508777	1/0	t0001	706	308	88	51	133	7	28	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/1	t0002	706	111	0	19	78	5	8	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	t0003	706	4	4	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	t0004	706	1	0	1	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	t0005	706	1	0	0	1	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	t0006	706	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	t0007	706	1	0	1	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	t0008	706	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD164L2_chr1_27374176_27388333	1/1	t0001	422	252	61	60	81	10	38	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0002	422	85	18	4	56	0	7	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0003	422	3	3	0	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0004	422	3	3	0	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0005	422	3	3	0	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0006	422	2	2	0	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0007	422	2	2	0	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0008	422	1	0	0	0	0	1	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0009	422	1	1	0	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0010	422	1	0	0	1	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	t0011	422	1	1	0	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164_chr6_109361514_109387467	1/1	t0001	2427	158	21	31	79	7	18	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0002	2427	141	15	27	68	6	25	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0003	2428	30	27	3	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0004	2427	28	3	5	16	2	2	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0005	2427	25	9	5	11	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0006	2427	18	0	5	11	1	1	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0007	2427	14	0	0	14	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0008	2427	9	0	0	9	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0009	2427	7	7	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0010	2428	4	4	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0011	2427	3	3	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0012	2427	2	2	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0013	2427	1	0	1	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0014	2428	1	1	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0015	2427	1	1	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0016	2427	1	1	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467