JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD164_chr6_109361514_109387467	0/0	t0017	2427	1	1	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0018	2427	1	0	0	1	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0019	2427	1	0	1	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0020	2427	1	1	0	0	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	t0021	2427	1	0	0	1	0	0	copy fasta	CD164	chr6	109361514	109387467
CD177_chr19_43348686_43368172	0/0	t0001	882	171	2	31	114	6	18	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	1/1	t0002	882	127	19	30	52	9	15	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0003	882	81	20	17	40	1	3	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0004	882	36	16	3	5	2	10	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0005	882	10	10	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0006	882	8	7	1	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0007	882	6	0	0	6	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0008	882	5	2	0	0	0	3	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0009	882	4	4	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0010	882	3	3	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0011	882	3	3	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0012	882	3	3	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0013	882	2	2	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0014	882	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0015	882	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0016	882	1	0	1	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0017	882	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0018	882	1	0	1	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0019	882	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	t0020	882	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD180_chr5_67174613_67201799	1/0	t0001	3403	180	12	39	94	7	27	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0002	3405	56	3	11	39	0	3	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0003	3403	39	0	12	18	3	6	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0004	3405	21	14	0	5	0	2	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0005	3403	18	16	0	0	1	1	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0006	3403	12	5	6	0	0	1	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0007	3407	10	8	2	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0008	3403	9	9	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0009	3405	8	0	0	8	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0010	3405	7	5	0	0	0	2	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0011	3403	7	7	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0012	3405	4	4	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0013	3403	3	0	0	3	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0014	3403	3	0	0	3	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0015	3403	3	0	0	3	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0016	3405	3	3	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0017	3403	3	3	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0018	3405	2	0	0	1	0	1	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0019	3405	2	2	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0020	3405	2	2	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0021	3403	1	1	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0022	3403	1	0	0	0	0	1	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0023	3403	1	0	0	1	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0024	3403	1	0	0	1	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0025	3393	1	0	0	0	1	0	copy fasta	CD180	chr5	67174613	67201799