JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD180_chr5_67174613_67201799	0/0	t0026	3405	1	1	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/1	t0027	3403	1	0	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0028	3405	1	0	1	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0029	3403	1	0	0	1	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0030	3405	1	0	0	1	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0031	3405	1	0	0	1	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0032	3403	1	1	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0033	3405	1	0	0	1	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0034	3405	1	1	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0035	3403	1	1	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	t0036	3405	1	0	1	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD19_chr16_28926971_28944342	1/1	t0001	248	250	22	61	128	12	25	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	t0002	252	74	25	1	32	0	16	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	t0003	260	24	8	0	15	0	1	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	t0004	258	17	16	0	1	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	t0005	256	15	14	1	0	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	t0006	250	13	3	0	10	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	t0007	254	4	1	1	2	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	t0008	262	2	1	0	1	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	t0009	248	1	0	0	1	0	0	copy fasta	CD19	chr16	28926971	28944342
CD1A_chr1_158249424_158263269	1/1	t0001	826	265	35	56	140	8	24	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0002	826	160	51	18	69	4	18	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0003	826	5	0	0	5	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0004	826	4	4	0	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0005	826	2	0	0	0	0	2	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0006	826	2	0	0	0	0	2	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0007	826	2	0	0	0	2	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0008	826	1	0	0	1	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0009	826	1	1	0	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0010	826	1	1	0	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0011	826	1	1	0	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0012	826	1	0	0	1	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	t0013	826	1	1	0	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1B_chr1_158322955_158336531	1/1	t0001	390	303	69	61	127	11	33	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	t0002	390	95	6	9	71	1	8	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	t0003	390	27	23	2	0	0	2	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	t0004	390	16	0	1	14	0	1	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	t0005	390	1	0	1	0	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1C_chr1_158284923_158299774	1/1	t0001	1441	316	67	55	142	14	36	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0002	1441	94	7	10	68	1	8	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0003	1441	16	15	1	0	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0004	1441	5	3	0	0	0	2	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0005	1441	4	0	2	0	0	2	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0006	1441	3	0	2	0	1	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0007	1441	2	0	0	2	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0008	1441	1	0	0	1	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0009	1441	1	0	0	1	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0010	1441	1	0	0	1	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0011	1441	1	0	1	0	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	t0012	1441	1	0	1	0	0	0	copy fasta	CD1C	chr1	158284923	158299774