JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD1C_chr1_158284923_158299774	0/0	t0013	1441	1	0	0	1	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1D_chr1_158175895_158191427	0/0	t0001	2485	174	48	31	59	9	27	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/1	t0002	2485	147	32	31	75	3	5	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0003	2485	55	2	7	36	2	8	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0004	2485	36	0	0	35	0	1	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0005	2485	4	3	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	1/0	t0006	2485	4	3	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0007	2485	2	2	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0008	2475	2	0	0	0	0	2	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0009	2485	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0010	2485	1	1	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0011	2485	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0012	2485	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0013	2485	1	0	0	0	0	1	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0014	2485	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0015	2485	1	0	1	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0016	2485	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0017	2485	1	1	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	t0018	2485	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1E_chr1_158348894_158362553	1/1	t0001	753	312	68	60	133	13	36	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	t0002	753	104	5	10	78	1	10	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	t0003	753	8	8	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	t0004	754	7	7	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	t0005	753	2	2	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	t0006	753	1	1	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	t0007	754	1	0	0	1	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	t0008	753	1	1	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD200R1L_chr3_112810711_112851864	1/1	t0001	851	331	75	63	145	13	33	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	t0002	851	31	12	3	9	1	6	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	t0003	851	30	0	0	30	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	t0004	782	7	6	1	0	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	t0005	851	5	0	1	1	0	3	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	t0006	851	1	1	0	0	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	t0007	851	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	t0008	851	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	t0009	851	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1_chr3_112916205_112980103	0/0	t0001	2719	226	62	43	97	7	17	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	1/0	t0002	2719	84	18	6	53	1	5	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0003	2719	37	0	1	36	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/1	t0004	2717	30	2	14	3	3	7	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0005	2719	10	4	5	0	1	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0006	2719	4	0	0	1	0	3	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0007	2717	3	0	0	2	0	1	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0008	2717	2	0	1	0	0	1	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0009	2719	2	0	2	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0010	2719	2	2	0	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0011	2717	2	0	0	2	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0012	2719	2	2	0	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0013	2719	1	1	0	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0014	2719	1	0	1	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103