JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD200R1_chr3_112916205_112980103	0/0	t0015	2719	1	0	0	0	0	1	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0016	2719	1	0	0	0	0	1	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0017	2719	1	1	0	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0018	2719	1	0	1	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0019	2719	1	0	0	0	0	1	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0020	2719	1	1	0	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0021	2719	1	0	0	1	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0022	2719	1	0	0	1	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0023	2719	1	0	0	0	0	1	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	t0024	2719	1	1	0	0	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200_chr3_112328156_112367812	0/1	t0001	1322	320	44	76	148	16	35	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0002	1322	35	16	1	17	0	1	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0003	1316	10	9	0	1	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	1/0	t0004	1320	9	8	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0005	1322	4	0	0	4	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0006	1322	4	3	1	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0007	1316	4	0	0	2	0	2	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0008	1322	3	3	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0009	1322	2	0	0	2	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0010	1316	2	2	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0011	1318	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0012	1322	1	0	0	0	0	1	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0013	1322	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0014	1322	1	0	0	1	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0015	1322	1	0	0	1	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0016	1322	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0017	1320	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0018	1322	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0019	1322	1	0	0	0	0	1	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0020	1322	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0021	1322	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0022	1322	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0023	1322	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0024	1316	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	t0025	1318	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD207_chr2_70825211_70840816	0/1	t0001	880	369	76	64	175	14	39	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	1/0	t0002	880	37	1	7	27	0	1	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0003	880	11	0	0	11	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0004	880	6	6	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0005	880	5	5	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0006	880	4	3	1	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0007	880	3	2	1	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0008	880	2	0	2	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0009	880	2	1	0	0	0	1	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0010	880	1	0	0	1	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0011	880	1	0	0	1	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0012	880	1	0	0	0	0	1	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0013	880	1	0	0	1	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	t0014	880	1	0	1	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD209_chr19_7734993_7752534	0/0	t0001	3069	105	12	12	66	6	9	copy fasta	CD209	chr19	7734993	7752534