JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD209_chr19_7734993_7752534	0/1	t0002	3069	90	7	28	26	8	20	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	1/0	t0003	3070	60	1	3	54	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0004	3069	21	0	1	17	1	2	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0005	3069	15	0	13	2	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0006	3069	14	4	1	7	0	2	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0007	3069	13	2	7	4	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0008	3069	10	10	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0009	3070	8	0	0	6	0	2	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0010	3069	6	5	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0011	3069	5	0	1	1	0	3	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0012	3069	5	0	0	5	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0013	3070	5	5	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0014	3070	5	5	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0015	3070	5	4	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0016	3070	4	4	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0017	3069	3	3	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0018	3070	3	2	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0019	3070	3	0	3	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0020	3069	3	0	0	0	0	3	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0021	3070	3	3	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0022	3070	3	0	0	3	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0023	3069	3	3	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0024	3069	3	1	1	0	1	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0025	3069	2	0	0	2	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0026	3069	2	1	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0027	3069	2	2	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0028	3070	2	0	0	0	0	2	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0029	3069	2	0	0	1	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0030	3069	2	0	0	2	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0031	3069	2	0	1	0	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0032	3069	1	0	0	0	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0033	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0034	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0035	3070	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0036	3070	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0037	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0038	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0039	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0040	3069	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0041	3070	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0042	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0043	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0044	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0045	3069	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0046	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0047	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0048	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0049	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0050	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0051	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534