JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD209_chr19_7734993_7752534	0/0	t0052	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0053	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0054	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0055	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0056	3069	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0057	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0058	3069	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0059	3069	1	0	0	0	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0060	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0061	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0062	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0063	3069	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0064	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0065	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0066	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0067	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0068	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0069	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0070	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0071	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0072	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0073	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0074	3069	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0075	3069	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	t0076	3070	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD226_chr18_69848274_69952873	0/0	t0001	11518	16	0	2	12	0	2	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0002	11517	16	0	9	0	1	6	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0003	11516	7	2	3	0	1	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0004	11513	6	0	0	5	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0005	11511	5	4	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0006	11532	5	0	5	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0007	11534	5	1	3	0	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0008	11533	4	1	0	2	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0009	11531	4	0	3	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0010	11532	4	0	3	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0011	11518	4	0	0	3	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	1/0	t0012	11508	3	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0013	11530	3	3	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0014	11532	3	2	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0015	11534	3	3	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0016	11517	3	1	0	1	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0017	11513	3	0	2	0	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0018	11512	3	1	1	0	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0019	11533	3	0	2	0	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0020	11535	3	0	1	0	0	2	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0021	11518	3	3	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0022	11494	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0023	11512	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0024	11511	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0025	11508	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873