JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD226_chr18_69848274_69952873	0/0	t0026	11518	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0027	11535	2	1	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0028	11531	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0029	11535	2	1	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0030	11533	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0031	11517	2	0	0	1	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0032	11516	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0033	11514	2	0	1	0	1	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0034	11532	2	0	2	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0035	11535	2	0	0	0	0	2	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0036	11534	2	0	0	2	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0037	11536	2	0	0	2	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0038	11536	2	0	0	1	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0039	11537	2	0	2	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0040	11534	2	0	0	2	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0041	11518	2	1	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0042	11518	2	1	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0043	11515	2	0	0	2	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0044	11518	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0045	11517	2	2	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0046	11530	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0047	11530	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0048	11513	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0049	11512	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0050	11508	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0051	11530	1	0	0	0	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0052	11531	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0053	11531	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0054	11513	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0055	11513	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0056	11512	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0057	11507	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0058	11506	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0059	11521	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0060	11520	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0061	11515	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0062	11516	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0063	11514	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0064	11514	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0065	11530	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0066	11531	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0067	11534	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0068	11534	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0069	11531	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0070	11530	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0071	11534	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0072	11537	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0073	11543	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0074	11539	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0075	11538	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873