JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD226_chr18_69848274_69952873	0/0	t0126	11519	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0127	11517	1	0	0	0	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0128	11516	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0129	11517	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0130	11516	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0131	11518	1	0	0	0	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0132	11520	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0133	11519	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0134	11517	1	0	0	0	0	1	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0135	11514	1	0	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0136	11514	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0137	11515	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0138	11510	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0139	11509	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0140	11530	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0141	11512	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0142	11519	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0143	11518	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0144	11534	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0145	11519	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0146	11519	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	t0147	11514	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD22_chr19_35324187_35352361	1/0	t0001	731	272	37	48	157	6	23	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0002	731	64	20	14	26	2	2	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0003	731	39	9	3	18	1	8	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/1	t0004	731	30	1	15	0	6	7	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0005	733	20	18	2	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0006	733	10	1	0	6	0	3	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0007	733	6	6	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0008	733	5	3	2	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0009	731	2	0	0	2	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0010	731	2	2	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0011	731	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0012	731	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0013	731	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0014	731	1	0	0	0	0	1	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0015	731	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0016	733	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0017	731	1	0	0	0	1	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	t0018	733	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD244_chr1_160825160_160867887	0/0	t0001	1398	116	19	11	65	6	15	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0002	1398	112	18	19	57	4	14	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	1/1	t0003	1398	94	11	18	53	3	7	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0004	1398	19	2	2	12	1	2	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0005	1398	11	5	1	4	1	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0006	1398	8	8	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0007	1398	5	4	1	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0008	1398	5	4	1	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0009	1398	4	4	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0010	1398	4	4	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887