JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD244_chr1_160825160_160867887	0/0	t0011	1398	3	3	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0012	1398	2	2	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0013	1398	2	1	0	0	1	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0014	1398	2	2	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0015	1398	2	1	0	0	0	1	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0016	1398	1	0	1	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0017	1398	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0018	1398	1	0	0	1	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0019	1398	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0020	1398	1	0	0	0	0	1	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0021	1398	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0022	1398	1	0	1	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0023	1398	1	0	1	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0024	1398	1	0	0	0	0	1	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0025	1398	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0026	1398	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0027	1398	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0028	1398	1	0	0	0	0	1	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0029	1398	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	t0030	1398	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD247_chr1_167425640_167523529	0/0	t0001	1106	245	63	52	94	11	25	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0002	1107	85	15	12	46	5	7	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0003	1106	22	7	3	12	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0004	1106	5	1	2	0	0	2	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0005	1097	4	2	1	0	0	1	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	1/0	t0006	1106	3	2	0	0	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0007	1106	3	3	0	0	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/1	t0008	1106	3	0	2	0	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0009	1106	1	0	0	0	0	1	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0010	1106	1	1	0	0	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0011	1106	1	0	0	1	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	t0012	1106	1	0	0	1	0	0	copy fasta	CD247	chr1	167425640	167523529
CD248_chr11_66309494_66322044	1/1	t0001	278	391	72	71	188	16	42	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0002	278	5	5	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0003	278	4	4	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0004	278	4	4	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0005	278	2	0	0	2	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0006	278	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0007	278	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0008	278	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0009	278	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0010	278	1	0	1	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	t0011	278	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD24_chr6_106964831_106979729	1/0	t0001	1914	200	21	42	106	8	22	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0002	1914	167	39	28	82	8	10	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/1	t0003	1914	29	9	4	13	1	1	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0004	1916	15	1	2	8	0	4	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0005	1914	11	11	0	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0006	1914	9	0	0	9	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0007	1914	8	8	0	0	0	0	copy fasta	CD24	chr6	106964831	106979729