JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD24_chr6_106964831_106979729	0/0	t0008	1914	6	4	1	0	1	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0009	1914	3	3	0	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0010	1914	2	0	0	2	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0011	1914	2	2	0	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0012	1916	2	0	0	2	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0013	1914	1	0	0	1	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0014	1914	1	0	0	0	0	1	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0015	1914	1	0	1	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0016	1914	1	0	0	1	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0017	1914	1	0	1	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0018	1914	1	1	0	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0019	1914	1	1	0	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	t0020	1914	1	0	1	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD274_chr9_5445542_5475554	0/0	t0001	2762	139	23	26	64	2	24	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0002	2762	108	0	22	71	6	9	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	1/1	t0003	2762	80	21	13	26	7	11	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0004	2762	15	15	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0005	2762	13	0	5	6	2	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0006	2762	10	0	7	3	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0007	2762	9	0	0	9	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0008	2762	7	5	2	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0009	2762	7	6	1	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0010	2762	6	6	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0011	2762	5	0	1	0	1	3	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0012	2762	3	0	0	3	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0013	2762	3	1	0	1	0	1	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0014	2762	2	2	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0015	2762	2	1	1	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0016	2762	2	2	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0017	2762	2	0	0	2	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0018	2762	2	0	0	2	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0019	2762	2	2	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0020	2762	1	0	0	0	0	1	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0021	2762	1	0	0	1	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0022	2762	1	0	0	1	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0023	2762	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0024	2762	1	0	0	1	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0025	2762	1	0	0	0	0	1	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0026	2762	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0027	2762	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	t0028	2762	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD276_chr15_73679383_73719514	1/1	t0001	1691	172	30	31	85	8	16	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0002	1691	120	15	30	53	3	19	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0003	1691	51	15	6	24	1	5	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0004	1691	12	12	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0005	1682	9	6	3	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0006	1689	4	0	1	0	0	3	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0007	1691	3	3	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0008	1691	2	2	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0009	1691	2	0	2	0	0	0	copy fasta	CD276	chr15	73679383	73719514