JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD276_chr15_73679383_73719514	0/0	t0010	1691	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0011	1691	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0012	1691	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0013	1691	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0014	1691	1	0	1	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0015	1691	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0016	1691	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0017	1691	1	0	0	0	0	1	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	t0018	1691	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD27_chr12_6439955_6456713	1/0	t0001	463	247	89	48	84	5	20	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/1	t0002	463	163	2	30	102	13	15	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	t0003	463	49	4	7	32	0	6	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	t0004	463	7	0	0	5	0	2	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	t0005	461	3	1	0	0	0	2	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	t0006	463	2	0	0	1	0	1	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	t0007	463	1	0	1	0	0	0	copy fasta	CD27	chr12	6439955	6456713
CD28_chr2_203701639_203743912	0/1	t0001	4059	213	54	41	85	6	26	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0002	4058	90	11	13	61	0	5	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0003	4075	18	1	4	7	4	2	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	1/0	t0004	4059	12	3	4	0	2	2	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0005	4057	10	0	0	10	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0006	4072	9	2	0	3	2	2	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0007	4062	5	4	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0008	4059	3	0	0	3	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0009	4065	3	3	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0010	4059	2	0	0	2	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0011	4058	2	0	0	0	2	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0012	4060	2	2	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0013	4059	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0014	4059	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0015	4059	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0016	4059	1	0	0	0	0	1	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0017	4059	1	0	1	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0018	4059	1	0	0	0	0	1	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0019	4059	1	0	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0020	4059	1	0	1	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0021	4059	1	0	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0022	4058	1	0	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0023	4059	1	0	0	0	0	1	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0024	4061	1	0	1	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0025	4059	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0026	4059	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0027	4057	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0028	4072	1	0	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0029	4078	1	0	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0030	4081	1	0	1	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0031	4058	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0032	4059	1	0	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	t0033	4059	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD2AP_chr6_47472789_47632263	0/1	t0001	3489	47	8	14	17	4	3	copy fasta	CD2AP	chr6	47472789	47632263