JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD2AP_chr6_47472789_47632263	0/0	t0002	3494	41	1	10	29	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0003	3496	12	1	3	8	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0004	3492	12	0	2	7	3	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0005	3493	11	0	2	8	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0006	3495	10	1	0	7	0	2	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0007	3496	8	0	3	5	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0008	3497	8	1	5	2	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0009	3492	7	1	1	3	1	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0010	3490	7	0	0	2	1	4	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0011	3491	6	0	1	1	0	4	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	1/0	t0012	3493	6	5	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0013	3498	6	2	1	1	2	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0014	3494	6	0	2	4	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0015	3495	5	0	0	5	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0016	3504	4	3	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0017	3488	4	1	0	3	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0018	3490	4	1	0	3	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0019	3492	4	1	0	3	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0020	3482	4	0	3	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0021	3489	3	3	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0022	3500	3	3	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0023	3497	3	3	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0024	3488	3	0	1	2	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0025	3494	3	0	0	2	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0026	3504	3	1	1	0	1	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0027	3494	2	1	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0028	3501	2	1	0	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0029	3502	2	2	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0030	3500	2	2	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0031	3504	2	2	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0032	3489	2	2	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0033	3495	2	1	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0034	3486	2	0	1	0	1	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0035	3490	2	1	0	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0036	3496	2	2	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0037	3494	2	2	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0038	3500	2	0	2	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0039	3492	2	0	0	0	0	2	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0040	3481	2	0	1	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0041	3493	2	0	1	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0042	3497	2	1	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0043	3493	2	0	2	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0044	3493	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0045	3491	1	0	0	0	1	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0046	3492	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0047	3496	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0048	3493	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0049	3489	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0050	3491	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0051	3489	1	0	0	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263