JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD2AP_chr6_47472789_47632263	0/0	t0052	3494	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0053	3493	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0054	3497	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0055	3495	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0056	3498	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0057	3499	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0058	3492	1	0	0	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0059	3506	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0060	3508	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0061	3493	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0062	3503	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0063	3505	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0064	3489	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0065	3493	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0066	3497	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0067	3499	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0068	3482	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0069	3482	1	0	0	0	1	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0070	3492	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0071	3491	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0072	3490	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0073	3494	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0074	3490	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0075	3496	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0076	3495	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0077	3486	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0078	3498	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0079	3492	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0080	3493	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0081	3494	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0082	3492	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0083	3490	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0084	3498	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0085	3496	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0086	3502	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0087	3498	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0088	3494	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0089	3506	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0090	3502	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0091	3510	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0092	3498	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0093	3494	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0094	3494	1	0	0	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0095	3469	1	0	0	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0096	3493	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0097	3495	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0098	3497	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0099	3495	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0100	3495	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	t0101	3501	1	0	0	0	1	0	copy fasta	CD2AP	chr6	47472789	47632263