JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD2BP2_chr16_30345773_30360308	1/0	t0001	2336	160	33	30	64	6	26	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/1	t0002	2336	109	56	21	17	2	12	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0003	2336	58	2	13	42	1	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0004	2336	15	0	11	0	3	1	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0005	2335	3	0	0	3	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0006	2336	2	0	0	2	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0007	2336	1	1	0	0	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0008	2336	1	0	1	0	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0009	2336	1	0	0	1	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0010	2336	1	0	0	0	0	1	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	t0011	2336	1	0	0	1	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2_chr1_116749430_116774229	1/1	t0001	510	433	84	70	214	15	48	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	t0002	510	12	0	0	12	0	0	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	t0003	510	8	8	0	0	0	0	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	t0004	510	2	2	0	0	0	0	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	t0005	510	1	0	0	0	1	0	copy fasta	CD2	chr1	116749430	116774229
CD300A_chr17_74461634_74489794	1/0	t0001	739	166	5	40	90	12	18	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/1	t0002	739	131	16	23	74	6	11	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	t0003	739	98	29	12	38	0	19	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	t0004	739	22	18	4	0	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	t0005	739	3	0	0	3	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	t0006	739	2	0	0	2	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	t0007	739	1	0	1	0	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	t0008	739	1	0	0	1	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300C_chr17_74536073_74551115	0/0	t0001	850	125	46	14	54	5	6	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	1/1	t0002	850	118	5	35	58	9	9	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0003	850	115	6	25	55	4	25	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0004	850	23	19	2	0	0	2	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0005	849	14	13	1	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0006	850	5	0	0	5	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0007	850	2	2	0	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0008	850	1	1	0	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0009	850	1	1	0	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0010	850	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0011	850	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0012	850	1	0	1	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	t0013	850	1	1	0	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300E_chr17_74604885_74628738	1/0	t0001	2886	143	12	31	73	10	16	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0002	2882	91	23	12	44	2	10	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/1	t0003	2886	44	3	22	9	3	6	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0004	2886	21	0	3	18	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0005	2890	20	18	2	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0006	2892	15	0	0	12	0	3	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0007	2878	9	0	0	9	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0008	2888	9	0	2	7	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0009	2888	8	0	0	8	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0010	2888	6	6	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0011	2888	6	0	1	3	2	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0012	2884	5	0	1	3	0	1	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0013	2886	5	0	0	5	0	0	copy fasta	CD300E	chr17	74604885	74628738